Update README with new information

README.md

@@ -1,13 +1,25 @@
+### Table of contents
+[Overview](#Overview)
+[Results/Output](#Results/Output)
+[Installation](#installation)
+[Source](#source)
+[Docker](#docker)
+[Application_Guide](#application-guide)
+[Issues](#issues)
+[Contributions](#contributions)
+
+
 # ATM
 Asteroid Thermal Modeling  
 [![Build Status](https://dev.azure.com/moeyensj/atm/_apis/build/status/moeyensj.atm?branchName=master)](https://dev.azure.com/moeyensj/atm/_build/latest?definitionId=3&branchName=master)
 [![Build Status](https://www.travis-ci.com/moeyensj/atm.svg?token=sWjpnqPgpHyuq3j7qPuj&branch=master)](https://www.travis-ci.com/moeyensj/atm)
 [![Coverage Status](https://coveralls.io/repos/github/moeyensj/atm/badge.svg?branch=master&t=wABWWi)](https://coveralls.io/github/moeyensj/atm?branch=master)
 [![Docker Pulls](https://img.shields.io/docker/pulls/moeyensj/atm)](https://hub.docker.com/r/moeyensj/atm)
-[![License](https://img.shields.io/badge/License-BSD%203--Clause-blue.svg)](https://opensource.org/licenses/BSD-3-Clause)
 
 ## Overview
 
+*** consider adding more in this section about what the project does and why you guys created it. This would be helpful for users trying to use your project***
+
 This is the main code repository that contains the ATM code. While this code can be used in a standalone fashion, please consider also downloading the atm_notebooks and atm_data repositories. 
 
 The reference paper "ATM: An open-source tool for asteroid thermal modeling and its application to NEOWISE data" can be found at: https://doi.org/10.1016/j.icarus.2019.113575. 
@@ -22,6 +34,10 @@ We recommend installing the code along one of two installation paths: either a s
 
 ### Source
 
+*** Try to update how to install the software for this project. I tried these methods several times and all of them failed.
+The primary issue I was having was I was unsure how to use conda since it is not described in this section. I also was unable to do the pip install since 
+my system said there was an error on line 7 of the requirements.txt it is possible I do not have somehting necessary for this command to work, but this should be mentioned in the project installation heading.
+
 Clone this repository using either `ssh` or `https`:
 
 ```GIT_LFS_SKIP_SMUDGE=1 git clone [email protected]:moeyensj/atm.git``` 
@@ -70,3 +86,20 @@ To run the container:
 The ATM code is installed the /projects directory, and is by default also installed in the container's Python installation. 
 
 **If you would like to run Jupyter Notebook or Juptyter Lab with ATM please see the installation instructions in the ATM notebooks repository.**
+
+### Application Guide
+
+Please consider adding this section to your readme. I was hoping to be able to create this section with relevent information to improve the readme and its functionality, but I was unable to run the project, so this was impossible for me. 
+
+### Issues
+
+Please consider addding this section to your documentation so that is anyone has any issues running the project they will be able to contact you. This would be very helpful
+for future people trying to use your software.
+
+### License
+
+[![License](https://img.shields.io/badge/License-BSD%203--Clause-blue.svg)](https://opensource.org/licenses/BSD-3-Clause)
+
+### Contributions
+
+Consider adding this section so that everyone that adds a significant contribution to this project can get recognition for their work.