The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.
This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.
collection of mass spectrometry imaging workflows
Python interface to detect and quantify intranuclear proteins
Minerva Cloud is a novel cloud-native (AWS) platform for high-dimensional microscopy image storage, management, and visualization.
A package for processing immunofluorescence (IF) microscopy image data.
A Python library for segmentation and classification of objects in microscopy images
Complete analysis pipeline for the segmentation & classification of structures / cells for LungMap images
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